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  <title>Damien Baigl Laboratory</title>
  <description><![CDATA[We actuate with light &amp; magnets, we fold &amp; unfold DNA, we cell-free express proteins, we play with drops, marbles &amp; interfaces, we organize particles, we harness coffee rings.]]></description>
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  <dc:date>2026-06-09T17:35:07+02:00</dc:date>
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   <title>Damien Baigl Laboratory</title>
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   <title>Eve Coscoy, Intern</title>
   <pubDate>Fri, 22 May 2026 13:10:00 +0200</pubDate>
   <dc:language>us</dc:language>
   <dc:creator>Sovannah David</dc:creator>
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   <title>Ultra-fast Isothermal Formation of DNA Nanostructures in Culture Media: Application to in situ Assembly of DNA Origami with Living Cells</title>
   <pubDate>Mon, 11 May 2026 19:39:00 +0200</pubDate>
   <dc:language>us</dc:language>
   <dc:creator>Jiashu LI</dc:creator>
   <dc:subject><![CDATA[Research]]></dc:subject>
   <description>
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      <img src="https://www.baigllab.com/photo/art/default/96509697-67287691.jpg?v=1779869707" alt="Ultra-fast Isothermal Formation of DNA Nanostructures in Culture Media: Application to in situ Assembly of DNA Origami with Living Cells" title="Ultra-fast Isothermal Formation of DNA Nanostructures in Culture Media: Application to in situ Assembly of DNA Origami with Living Cells" />
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      <strong>Abstract:</strong><u><strong>&nbsp;</strong></u> <br />  Synthetic DNA strands are programmable and biocompatible building blocks that can be combined through hybridization to form user-defined nanostructures, but their assembly traditionally requires cell-incompatible conditions, imposing a lengthy ex situ fabrication step before any application with living matter. Here we demonstrate for the first time that 2D and 3D DNA origami structures can isothermally self-assemble at 37°C within minutes, directly in cell culture media, both in the absence and in the presence of living cells. Scaffold-free structures of extended dimensions, such as micrometer-long DNA nanotubes, can also self-assemble when the system is given more time to evolve. With human cell lines, 2D and 3D origami structures in situ self-assemble in 5 to 15&nbsp;min, and remain stable for about 24&nbsp;h and up to 3 days when actin monomers are added. Similar self-assembly performance is observed in the presence of more complex tissue-like systems, such as human induced pluripotent stem cells evolving into cerebral organoids. This ultra-fast, life-compatible self-assembly method drastically simplifies the fabrication of complex DNA nanostructures and enables the creation of in situ self-assembling nanomachines for direct and adaptive interactions with living cells. <br />   <br />  <strong>Reference:&nbsp;</strong> <br />  L.Bourdon, G. D.Wilkens, S.Dehissi, et al. “Ultra-Fast Isothermal Formation of DNA Nanostructures in Culture Media: Application to In Situ Assembly of DNA Origami With Living Cells.” Small22, no. 9 (2026): e09401. <a class="link" href="https://doi.org/10.1002/smll.202509401">https://doi.org/10.1002/smll.202509401</a>  <br />  &nbsp;
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   <title>Reversible Sequence-Dependent DNA Coacervation with an Azobenzene Intercalator</title>
   <pubDate>Mon, 11 May 2026 19:39:00 +0200</pubDate>
   <dc:language>us</dc:language>
   <dc:creator>Jiashu LI</dc:creator>
   <dc:subject><![CDATA[Research]]></dc:subject>
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      <img src="https://www.baigllab.com/photo/art/default/96509723-67287696.jpg?v=1780492702" alt="Reversible Sequence-Dependent DNA Coacervation with an Azobenzene Intercalator" title="Reversible Sequence-Dependent DNA Coacervation with an Azobenzene Intercalator" />
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      <h4 style="box-sizing: border-box; outline: none; margin-top: 0px; margin-bottom: 0.9375rem; font-size: 1.125rem;">&nbsp;</h4>    <div class="article_abstract-title" id="Abstract" style="box-sizing: border-box; outline: none; scroll-margin-block: 7.5rem; color: rgb(21, 21, 21); font-family: Roboto, arial, sans-serif;" tabindex="0">  <h2 style="box-sizing: border-box; outline: none; font-size: 1.25rem; margin-block-end: 1rem; margin: 0px; margin-inline-end: 0.25rem; font-weight: 600; display: inline;">Abstract</h2>  </div>    <div class="article_abstract-content hlFld-Abstract" id="abstractBox" property="description" style="box-sizing: border-box; outline: none; margin-block-end: 1rem; color: rgb(21, 21, 21); font-family: Roboto, arial, sans-serif;">  <p class="articleBody_abstractText" style="box-sizing: border-box; outline: none; font-size: 1rem; margin: 0px; margin-block-start: 1.25rem;">Based on electrostatic interactions and entropic gains from counterion release, DNA coacervates constitute an exciting example of associative assemblies due to high local DNA concentrations and their applications in therapeutics, biomimicry, and biosensing. Because charge density is not affected by DNA sequence, resulting coacervates are intrinsically nonspecific to the nucleobase composition of DNA. Here, we report that using an azobenzene-based DNA binder, AzodiGua, able to intercalate between DNA base pairs, can bring sequence sensitivity to DNA coacervation. We show that different amounts of AzodiGua are necessary to induce coacervation as a function of the double- or single-stranded nature of DNA, the fraction and distribution of GC base pairs a per double-stranded DNA oligonucleotides. In addition, resulting coacervates are shown to be reversibly photosensitive via <i style="box-sizing: border-box; outline: none;">trans</i>/<i style="box-sizing: border-box; outline: none;">cis</i> isomerization of AzodiGua's azobenzene moiety. Due to the lower efficiency of the <i style="box-sizing: border-box; outline: none;">cis</i>-isomer for DNA coacervation, coacervates can be dissolved by UV illumination and reformed back by blue light illumination. Interestingly, selective sequestration of the <i style="box-sizing: border-box; outline: none;">trans</i>-AzodiGua by α-cyclodextrin allows us to achieve a reversed-photocontrol regime, under which coacervates are favored under UV illumination. <br />  </div>    <h4 style="box-sizing: border-box; outline: none; margin-top: 0px; margin-bottom: 0.9375rem; font-size: 1.125rem;"> <br />  <strong>Reference:&nbsp;</strong></h4>    <div style="box-sizing: border-box; outline: none; color: rgb(0, 0, 0); font-family: Roboto, arial, sans-serif;">Yunzhe Li, Julie Pham, Mathieu Morel, Damien Baigl, and Sergii Rudiuk</div>    <div style="box-sizing: border-box; outline: none; color: rgb(0, 0, 0); font-family: Roboto, arial, sans-serif;"><cite style="box-sizing: border-box; outline: none;">Langmuir</cite> <span style="box-sizing: border-box; outline: none; font-weight: bolder;">2025</span> <em style="box-sizing: border-box; outline: none;">41</em> (49), 33320-33328</div>    <h4 style="box-sizing: border-box; outline: none; margin-top: 0px; margin-bottom: 0.9375rem; font-size: 1.125rem;"><a class="link" href="https://doi.org/10.1002/smll.202509401">https://doi.org/10.1002/smll.202509401</a>  <span style="font-size: 16px;"><a class="link" href="https://doi.org/10.1021/acs.langmuir.5c04489">https://doi.org/10.1021/acs.langmuir.5c04489</a>  </span></h4>  
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   <link>https://www.baigllab.com/Reversible-Sequence-Dependent-DNA-Coacervation-with-an-Azobenzene-Intercalator_a205.html</link>
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   <title>Damien's GIAN invited lecture in NIT Calicut</title>
   <pubDate>Mon, 11 May 2026 16:44:00 +0200</pubDate>
   <dc:language>us</dc:language>
   <dc:creator>Sovannah David</dc:creator>
   <dc:subject><![CDATA[News]]></dc:subject>
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      Damien was invited to the National Institute of Calicut (Kerala, India) as part of the&nbsp;Global Initiative of Academic Networks (GIAN),&nbsp;which is a program of the Ministry of Education, Government of India. <br />  Damien gave a series of lectures and supervised lab hands-on together with Subramanyan Varanakkottu former postdoc, now assisant prof at NIT Calicut. <br />  50 students, Master, PhD students, and postdocs from all over India attended the classes. <br />  Damien really enjoyed his stay in Kerala, quotation : "I think we should take inspiration of this very holistic concept of campus organization where education, research and nature are completely blended and integrated". <br />  &nbsp;
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   <link>https://www.baigllab.com/Damien-s-GIAN-invited-lecture-in-NIT-Calicut_a203.html</link>
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   <title>Layla Fuoco, Research Engineer</title>
   <pubDate>Thu, 07 May 2026 16:15:00 +0200</pubDate>
   <dc:language>us</dc:language>
   <dc:creator>Sovannah David</dc:creator>
   <dc:subject><![CDATA[People]]></dc:subject>
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   Layla is our expert in coding, organoids and Next Generation Sequencing     <div style="position:relative; text-align : center; padding-bottom: 1em;">
      <img src="https://www.baigllab.com/photo/art/default/96444166-67251769.jpg?v=1778163448" alt="Layla Fuoco, Research Engineer" title="Layla Fuoco, Research Engineer" />
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